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// Authors: S. Guatelli , M. G. Pia, INFN Genova and F. Ambroglini INFN Perugia, Italy
// 
// Based on code developed by the undergraduate student G. Guerrieri 
// Note: this is a preliminary beta-version of the code; an improved 
// version will be distributed in the next Geant4 public release, compliant
// with the design in a forthcoming publication, and subject to a 
// design and code review.
//
#include "G4MIRDUpperLargeIntestine.hh"

#include "globals.hh"
#include "G4SystemOfUnits.hh"
#include "G4SDManager.hh"
#include "G4VisAttributes.hh"
#include "G4EllipticalTube.hh"
#include "G4UnionSolid.hh"
#include "G4RotationMatrix.hh"
#include "G4ThreeVector.hh"
#include "G4VPhysicalVolume.hh"
#include "G4PVPlacement.hh"
#include "G4LogicalVolume.hh"
#include "G4HumanPhantomMaterial.hh"
#include "G4HumanPhantomColour.hh"

G4MIRDUpperLargeIntestine::G4MIRDUpperLargeIntestine()
{
}

G4MIRDUpperLargeIntestine::~G4MIRDUpperLargeIntestine()
{
}


G4VPhysicalVolume* G4MIRDUpperLargeIntestine::Construct(const G4String& volumeName,
							G4VPhysicalVolume* mother,
							const G4String& colourName
							, G4bool wireFrame,G4bool)
{
  G4cout<<"Construct "<<volumeName<<" with mother volume "<<mother->GetName()<<G4endl;
 
  G4HumanPhantomMaterial* material = new G4HumanPhantomMaterial();
  G4Material* soft = material -> GetMaterial("soft_tissue");
  delete material;

  G4double dx = 2.5 * cm; // aU
  G4double dy = 2.5* cm; //bU
  G4double dz = 4.775 * cm; //dzU

  G4VSolid* AscendingColonUpperLargeIntestine = new G4EllipticalTube("AscendingColon",dx, dy, dz);
 
  dx = 2.5 * cm;//bt
  dy = 1.5 *cm;//ct
  dz = 10.5* cm;//x1t

  G4VSolid* TraverseColonUpperLargeIntestine = new G4EllipticalTube("TraverseColon",dx, dy, dz);

  G4RotationMatrix* relative_rm =  new G4RotationMatrix();
  relative_rm -> rotateX(90. * degree);
  relative_rm -> rotateZ(0. * degree);
  relative_rm -> rotateY(90. * degree);
  G4UnionSolid* upperLargeIntestine = new G4UnionSolid("UpperLargeIntestine",
						       AscendingColonUpperLargeIntestine,
						       TraverseColonUpperLargeIntestine,
						       relative_rm, 
						       G4ThreeVector(8.0 *cm, 0.0,6.275 * cm)); //,0,dzU + ct transverse
  

  G4LogicalVolume* logicUpperLargeIntestine = new G4LogicalVolume(upperLargeIntestine, soft,
								  "logical" + volumeName, 
								  0, 0, 0);
 
  G4VPhysicalVolume* physUpperLargeIntestine = new G4PVPlacement(0,
								 G4ThreeVector(-8.0 * cm, -2.36 *cm,-15.775 *cm),
								 "physicalUpperLargeIntestine",                 //xo, yo, zo ascending colon
								 logicUpperLargeIntestine,
								 mother,
								 false,
								 0, true);

  

  // Visualization Attributes
  //  G4VisAttributes* UpperLargeIntestineVisAtt = new G4VisAttributes(G4Colour(1.0,1.0,0.0));
  G4HumanPhantomColour* colourPointer = new G4HumanPhantomColour();
  G4Colour colour = colourPointer -> GetColour(colourName);
  G4VisAttributes* UpperLargeIntestineVisAtt = new G4VisAttributes(colour);
  UpperLargeIntestineVisAtt->SetForceSolid(wireFrame);
  logicUpperLargeIntestine->SetVisAttributes(UpperLargeIntestineVisAtt);

  G4cout << "UpperLargeIntestine created !!!!!!" << G4endl;

  // Testing UpperLargeIntestine Volume
  G4double UpperLargeIntestineVol = logicUpperLargeIntestine->GetSolid()->GetCubicVolume();
  G4cout << "Volume of UpperLargeIntestine = " << UpperLargeIntestineVol/cm3 << " cm^3" << G4endl;
  
  // Testing UpperLargeIntestine Material
  G4String UpperLargeIntestineMat = logicUpperLargeIntestine->GetMaterial()->GetName();
  G4cout << "Material of UpperLargeIntestine = " << UpperLargeIntestineMat << G4endl;
  
  // Testing Density
  G4double UpperLargeIntestineDensity = logicUpperLargeIntestine->GetMaterial()->GetDensity();
  G4cout << "Density of Material = " << UpperLargeIntestineDensity*cm3/g << " g/cm^3" << G4endl;

  // Testing Mass
  G4double UpperLargeIntestineMass = (UpperLargeIntestineVol)*UpperLargeIntestineDensity;
  G4cout << "Mass of UpperLargeIntestine = " << UpperLargeIntestineMass/gram << " g" << G4endl;

  
  return physUpperLargeIntestine;
}
