Metadata-Version: 1.0
Name: bio2bel-reactome
Version: 0.0.1
Summary: A package for converting Reactome to BEL
Home-page: https://github.com/bio2bel/reactome
Author: Charles Tapley Hoyt and Daniel Domingo-Fernández
Author-email: charles.hoyt@scai.fraunhofer.de
License: MIT License
Description: Bio2BEL Reactome |build| |coverage| |docs|
        ==========================================
        This package converts Reactome to BEL. So far, exporting the pathway namespace has been implemented.
        
        Installation
        ------------
        This code can be installed with :code:`pip3 install git+https://github.com/bio2bel/reactome.git`
        
        Note that the two following resources should be installed and loaded in order to fully populate the tables of the database:
        
        - `Bio2BEL CHEBI <https://github.com/bio2bel/chebi>`_
        - `Bio2BEL HGNC <https://github.com/bio2bel/hgnc>`_
        
        These two resources will be installed together with this package and can be quickly loaded by running the following commands:
        
        1. :code:`python3 -m bio2bel_hgnc populate`
        2. :code:`python3 -m bio2bel_chebi populate`
        
        
        Creating a Local Copy of the Namespace
        --------------------------------------
        A BEL namespace can be generated with :code:`python3 -m bio2bel_reactome write -o ~/Downloads/reactome.belns`
        
        Citation
        --------
        - Fabregat, Antonio et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 44.Database issue (2016): D481–D487. PMC. Web. 6 Oct. 2017.
        - Croft, David et al. “The Reactome Pathway Knowledgebase.” Nucleic Acids Research 42.Database issue (2014): D472–D477. PMC. Web. 6 Oct. 2017.
        
        .. |build| image:: https://travis-ci.org/bio2bel/reactome.svg?branch=master
            :target: https://travis-ci.org/bio2bel/reactome
            :alt: Build Status
        
        .. |coverage| image:: https://codecov.io/gh/bio2bel/reactome/coverage.svg?branch=master
            :target: https://codecov.io/gh/bio2bel/reactome?branch=master
            :alt: Coverage Status
        
        .. |docs| image:: http://readthedocs.org/projects/bio2bel-reactome/badge/?version=latest
            :target: http://bio2bel.readthedocs.io/projects/reactome/en/latest/?badge=latest
            :alt: Documentation Status
        
Platform: UNKNOWN
