MANIFEST.in
README.rst
Supplementary Data S1.csv
requirements.txt
setup.py
VEnCode/__init__.py
VEnCode/_metadata.py
VEnCode/common_variables.py
VEnCode/internals.py
VEnCode/internals_extensions.py
VEnCode/view.py
VEnCode.egg-info/PKG-INFO
VEnCode.egg-info/SOURCES.txt
VEnCode.egg-info/dependency_links.txt
VEnCode.egg-info/requires.txt
VEnCode.egg-info/top_level.txt
VEnCode/Files/Human.sample_name2library_id.txt
VEnCode/Files/__init__.py
VEnCode/Files/sample types - FANTOM5.csv
VEnCode/Files/test_hg19.cage_peak_phase1and2combined_tpm.osc.txt
VEnCode/Files/test_human_permissive_enhancers_phase_1_and_2_expression_tpm_matrix.txt
VEnCode/Files/Dbs/Adipocyte - breast_tpm_enhancers-1.csv
VEnCode/Files/Dbs/Adipocyte - breast_tpm_promoters-1.csv
VEnCode/Files/Dbs/Bronchial Epithelial Cell_tpm_promoters-1.csv
VEnCode/Files/Dbs/Hepatocyte_tpm_promoters-1.csv
VEnCode/Files/Dbs/Keratocytes_tpm_promoters-1.csv
VEnCode/scripts/__init__.py
VEnCode/scripts/check_element_expression.py
VEnCode/scripts/check_vencode_expression_from_file.py
VEnCode/scripts/collapse_vencodes_percent_active.py
VEnCode/scripts/dendogram_primary.py
VEnCode/scripts/e_value_statistics.py
VEnCode/scripts/external_data_set_analysis.py
VEnCode/scripts/generate_datasets.py
VEnCode/scripts/generate_datasets_cancer.py
VEnCode/scripts/get_validated_vencodes.py
VEnCode/scripts/get_vencode_external.py
VEnCode/scripts/get_vencodes.py
VEnCode/scripts/inter_robustness.py
VEnCode/scripts/inter_robustness_heu2.py
VEnCode/scripts/intra_robustness.py
VEnCode/scripts/intra_robustness_heu2.py
VEnCode/scripts/num_validated_elements.py
VEnCode/scripts/percent_re_matching_datasets.py
VEnCode/scripts/percentage_cts_with_ven.py
VEnCode/scripts/percentage_cts_with_ven_heu2.py
VEnCode/scripts/table_vens.py
VEnCode/scripts/validation.py
VEnCode/scripts/validation_utils.py
VEnCode/scripts/vencodes_percent_active.py
VEnCode/scripts/venn_diagrams_validation.py
VEnCode/scripts/Legacy Scripts/Main_Fantom.py
VEnCode/scripts/Legacy Scripts/__init__.py
VEnCode/scripts/Legacy Scripts/classes.py
VEnCode/scripts/Legacy Scripts/figures_1.py
VEnCode/scripts/Legacy Scripts/figures_2.py
VEnCode/scripts/Legacy Scripts/find_vencodes_each_celltype.py
VEnCode/scripts/Legacy Scripts/generate_datasets_old.py
VEnCode/scripts/Legacy Scripts/get_best_vencode.py
VEnCode/scripts/Legacy Scripts/get_vencodes.py
VEnCode/scripts/Legacy Scripts/inter_robustness.py
VEnCode/scripts/Legacy Scripts/intra_robustness_old.py
VEnCode/scripts/Legacy Scripts/plots_evalue_norm.py
VEnCode/scripts/Legacy Scripts/sampling_vs_heuristic.py
VEnCode/scripts/Legacy Scripts/test_databaseOperations.py
VEnCode/scripts/Legacy Scripts/test_utils.py
VEnCode/scripts/Legacy Scripts/ven_diagrams.py
VEnCode/tests/__init__.py
VEnCode/tests/test_internals.py
VEnCode/utils/__init__.py
VEnCode/utils/decorators.py
VEnCode/utils/dir_and_file_handling.py
VEnCode/utils/exception_handlers.py
VEnCode/utils/exceptions.py
VEnCode/utils/general_utils.py
VEnCode/utils/input_handlers.py
VEnCode/utils/pandas_utils.py
VEnCode/utils/plotting_utils.py
VEnCode/utils/sqlite_utils.py
VEnCode/utils/util.py
VEnCode/utils/validation_utils.py